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Plot the matrices corresponding to a Multiplex Network

Source: R/plotMyMultiplexMatrix.R
plotMyMultiplexMatrix.Rd

Plot the matrices corresponding to a Multiplex Network

Usage

plotMyMultiplexMatrix(listSBM, memberships = NULL, plotOptions = list())

Arguments

listSBM

: a list of objects representing the multiplex network (see)

memberships

: a list of length equal to the number of Functional Groups providing the clusterings inside each group.

plotOptions

: a list containing the options. See details.

Value

a ggplot object corresponding to the plot

Details

plotOptions is a list containing the following items

  • "normalized": Boolean. TRUE if the various matrices are presented in the same scale (between O and 1). FALSE otherwise. Default value FALSE

  • "compact": Boolean. Default value is TRUE if you ask for the matrices to be transposed to have a more compact view

  • "legend": Boolean. Set TRUE if you want to see the legend. Default value is FALSE

  • "legend.title": Boolean. Set TRUE if you want to print the title of the legend. Default value is FALSE

  • "legend.position": Position of the legend. Possible values are 'bottom', 'top','left,'right'. Default value is 'bottom'

  • "nodeNames": Set true if the node Names must be plotted. Default value is FALSE

  • "line.color": The color of the lines to separate groups. Default value is red

  • "line.width": Width of the lines to separate groups. Default value is NULL, automatically chosen

  • "title": Title of the plot. Default value is NULL

  • "names.size": Numeric. Size (in pts) of the node names. Default value is NULL: the size decreases with the number of nodes

  • "blockBackground": Boolean. Color the background of each block, with an opacity growing with the mean value of the entries in the block. Only used when a clustering is provided. Default value is TRUE

  • "graphonColors": Boolean. Color the entries with the colors of the graphon (from blockAlpha.min to blockAlpha.max opacity of block.color) instead of white to black. Ignored for binary matrices. Default value is FALSE

  • "block.color": Chain of character. The color of the block background. Default value is red

  • "blockAlpha.min", "blockAlpha.max": Numeric. Opacity of the least and most dense blocks. Default values are 0.1 and 0.6

Examples

Nnodes <- c(40,30)
blockProp <- list(c(.4,.6),c(0.5,0.5))
nbLayers <- 2
connectParam <- list(list(mean=matrix(rbeta(4,.5,.5),2,2)),list(mean=matrix(rexp(4,.5),2,2)))
names(connectParam) <- c('Read','Score')
model <- c("bernoulli","poisson")
type <- "bipartite"
mySampleMultiplexSBM <-
 sampleMultiplexSBM(
   nbNodes = Nnodes,
   blockProp = blockProp,
   nbLayers = nbLayers,
   connectParam = connectParam,
   model=model,
   dimLabels =  c('readers','books'),
   type=type)
#> [1] "use of sampleMultipartite"
listNet <- mySampleMultiplexSBM$listSBM
names(listNet) <- c("Read","Affinity")
plotMyMultiplexMatrix(listNet,plotOptions=list(legend = TRUE))