Define a network providing its matrix of interactions and specifying the functions groups in row and col.

Define a network providing its matrix of interactions and specifying the functions groups in row and col.

defineNetwork(mat, typeInter, rowFG, colFG)

Arguments

mat	An adjacency matrix (symmetric or not) or an incidence matrix
typeInter	Type of the matrix, choice between "inc" (incidence), "adj" (adjacency) and "diradj" (directed adjacency)
rowFG	Name of the functional group in row
colFG	Name of the function group in column

Value

a list object formatted for the GREMLINS package

Examples

A <- matrix(rbinom(100,1,.2),10,10)
type <- "diradj"
defineNetwork(A,"diradj","FG1","FG1")
#> $mat
#>       [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10]
#>  [1,]    0    0    1    0    0    0    0    0    1     0
#>  [2,]    1    0    0    0    0    0    0    0    0     0
#>  [3,]    0    0    0    0    0    1    0    0    0     0
#>  [4,]    1    0    0    1    1    1    0    0    0     1
#>  [5,]    0    1    0    0    0    0    0    1    0     0
#>  [6,]    0    0    0    0    0    0    0    0    1     0
#>  [7,]    1    0    0    0    0    0    0    1    0     1
#>  [8,]    0    1    0    0    0    1    0    0    0     1
#>  [9,]    0    1    1    1    0    0    0    0    1     0
#> [10,]    0    0    0    0    0    0    1    0    0     1
#> 
#> $typeInter
#> [1] "diradj"
#> 
#> $rowFG
#> [1] "FG1"
#> 
#> $colFG
#> [1] "FG1"
#>